CLC Main Workbench

CLC Main Workbench creates a software environment enabling users to make a large number of advanced DNA, RNA, and protein sequence analyses, combined with gene expression Analysis, smooth data management, and excellent graphical viewing and output options. New features Expression analysis: Volcano plots: you can now choose the values to plot on the x-axis. Choose Between "Difference" and "Fold change".Table view of bar plots shows the same intervals as are shown in the bar plot. Generic importer for expression array data in tabular format.Generic importer for expression experiment annotation data in tabular format.Gene Ontology (GO) files can now be used to Annotate an expression experiment.Tag profiling: You are no longer allowed to annotate tag samples, only experiments Side panel of experiment table has been re-organized to provide better overview.Opening consensus sequence including gaps will also put Ns before the consensus sequence starts and after it ends Deployment You can set a path to the Default data location used when the Workbench starts for the first time. This is a feature to help system administrators control where new installations per default save their data.Support for removing tools accessing the internet (NCBI BLAST, update notifications etc).General import and export Support for import of Complex regions from GFF files Export tables and reports in Excel format. Import section of user manual re-structured to provide better overview. Expression data importers are now described in technical details in a separate section.You can now export multiple sequence lists in fasta format Forced import of zip files is now supported (it will force import the contents of the zip file) The standard import now accepts gzip and tar files as well as zip